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Haliotis_fulgens_assembly.fasta |
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Haliotis fulgrens (Green Abalone) |
nanoplot, downpore, flye, racon, medaka |
HalFul_medaka.FINAL.fasta |
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H_sorenseniV2_assembly.fasta |
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Haliotis sorenseni v2 (White abalone v2) |
Flye (2.6-release), pilon-1.22 |
White abalone genome assembly |
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Repeat Modeler Repeats |
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Haliotis sorenseni v2 (White abalone v2) |
Repeat Modeler, Repeat Masker |
Rick Masonbrink |
View on JBrowse |
|
InterproScan Gene Annotations |
|
Haliotis sorenseni v2 (White abalone v2) |
Braker2 genes with Interpro annotations |
Rick Masonbrink |
View on JBrowse |
|
FreeBayes SNPs |
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Haliotis sorenseni v2 (White abalone v2) |
freebayes snps filtered by snphylo |
Rick Small VCF test |
View on JBrowse |
|
Draft Braker2 Gene Models |
|
Haliotis sorenseni v2 (White abalone v2) |
Braker2 with Uniprot Mollusca and Red Abalone proteins |
Rick Preliminary Annotation |
View on JBrowse |
|
Haliotis rufescens protein sequences |
|
Haliotis rufescens (Red abalone) |
augustus and emboss |
Halruf.fasta and Halruf.gff3 |
|
|
SNPs from Black,Green,Pinto,Pink,Red and White abalone |
|
Haliotis rufescens (Red abalone) |
GATK |
SNPs_BlkGrnPntPnkRedWht_GBE2018.vcf renamed from snphylo.output.filtered.sorted.vcf |
View on JBrowse |
|
Genome Assembly |
|
Haliotis rufescens (Red abalone) |
MaSurCA |
Halruf.fasta |
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|
Genome Annotation |
|
Haliotis rufescens (Red abalone) |
MAKER2 |
Halruf.gff3 |
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